rs31638250 SNP Detail

Summary

• ID
  rs31638250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCATCCAG GCCACACCAG CGTCGGCCCA GGCCCAACTT
  CCGTCACCAC CTGCTGCCAA GTAGGGGTCC CAGCTGCACA GGACCGAACC CAGGAAGCCT
  Y
  TTTAGGCTCT CTTTTAAAAG CCGATCTGAC TCCACTGCCC AGCCAGATGT CCCAATCGCC
  GTCAAGACAG CCTTTCCCAA CCACACCTAG ATGTCCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46052912	mCV25394712	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148682375	ENSMUSSNP4729837	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss322135225	CHEV_7_31339692	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31638250					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1139 bp distal
Cpgi18810	CpG island 18810	76 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	768 bp downstream
Mir9769	microRNA 9769	1769 bp downstream
Rr644848	regulatory region 644848	1911 bp distal
Rr644849	regulatory region 644849	1395 bp distal
Rr644850	regulatory region 644850	1172 bp distal
Tssr65780	transcription start site region 65780	1401 bp downstream
Tssr65781	transcription start site region 65781	1364 bp downstream
Tssr65782	transcription start site region 65782	99 bp upstream
Tssr65783	transcription start site region 65783	174 bp upstream
Tssr65784	transcription start site region 65784	198 bp upstream
Tssr65785	transcription start site region 65785	250 bp upstream
Tssr65786	transcription start site region 65786	268 bp upstream
Tssr65787	transcription start site region 65787	362 bp upstream
Tssr71789	transcription start site region 71789	within coordinates
Tssr71790	transcription start site region 71790	104 bp downstream