rs31639108 SNP Detail

Summary

• ID
  rs31639108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152585427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGTTGGTC CTGGGGTCCC ATCTATCTTA TCTTTTGAGA CAGTGTCTGT CATTGGCCTG
  AGCTGACCTG CTAGACTAGG CTGGATGACC TGTGGGTTCT GGGCTTCTGT GTTTGTCTCC
  CCAATCTAAA ATTACAAGTT CATTTTATCA CACCCAACAT TCTAAATGTG GGTTCTGAGG
  ATCCAAGTTA TGTTCTCATG CTTGTCCAGC AACAGGTGGC TTGCTGACTG AGCCAACAAC
  CTGACCCCTT GTGGTAAATA TGTGTGTGTA TGTATATATG TGATATGGGT GTATATATGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTT GTGTGTATGT GTGTGTATGT GTGTGTATGT
  ATGTATATAT ATATGTGTGT GTGTGTATCT GTATGTGATA TATGTGTATA TGTGTGTATG
  TATATATGTG TGTCTGTGTG TATCTGTATG TGTGTCTGTG TGTATCTGTC TGTCTGTCTG
  TCTGTCTCCA CAGTTAAGAA AACTGCTAAT GTACAAATGC AGACCTGGCT TCAGACTAAG
  TGAATTACCC TGTGAGAAGC CAGTTTCCCA AGCTGTATGT GTGTAATTCA AAAGGCTATA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45554724	mCV25265466	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136104270	ENSMUSSNP1389755	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss321029023	CHEV_3_152542754	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31639108					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152585427 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	within coordinates
Rr79922	regulatory region 79922	174 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates