rs3163959 SNP Detail

Summary

• ID
  rs3163959
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75602292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACACTCGG GAAGCTGGGG CAGGAGGATC ACTTCAAGTT
  CAAGGCTAGC CTGTTTTACA CAACAGATTC AGGTCAGTCA GGGCCACCTA GAAAGAGCCA
  K
  TCTCAAAACC ACAAATATAG CACGAATAGT ATAGTATGCT TATTGGATCC AGTTTCCATC
  ACTCGGTTCT TGAAAAATAG ACCCCATGCC GGGGTCTAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38517335	mCV27595435	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss147174592	ENSMUSSNP5316912	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs3163959					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75602292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1728	CpG island 1728	1741 bp distal
Gm19326	predicted gene, 19326	703 bp upstream
Gm66464	predicted gene, 66464	within coordinates
Rr401992	regulatory region 401992	1912 bp downstream
Rr434122	regulatory region 434122	1977 bp distal
Rr434123	regulatory region 434123	1018 bp distal
Rr434124	regulatory region 434124	1110 bp distal
Rr434125	regulatory region 434125	967 bp distal
Rr434126	regulatory region 434126	237 bp distal
Tssr94136	transcription start site region 94136	1981 bp downstream