rs31640604 SNP Detail

Summary

• ID
  rs31640604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127292335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC ACCTGACGGA TCCGCGGGGG
  R
  TTCTGCGGGG TGCAGGCCCC TCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45554631	mCV24304154	ABI	CRAMUS_MOUSE	f	SNP	A		G
ss135865092	ENSMUSSNP3809970	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320954686	CHEV_3_127201604	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31640604					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127292335 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	within coordinates
Rr584800	regulatory region 584800	305 bp proximal
Tssr35576	transcription start site region 35576	300 bp downstream
Tssr35577	transcription start site region 35577	363 bp downstream
Tssr35578	transcription start site region 35578	390 bp downstream
Tssr35579	transcription start site region 35579	409 bp downstream