rs31640863 SNP Detail

Summary

• ID
  rs31640863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100945976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCCCAT CCACACACTG
  GGCCCACACT TATCTCACAT CATTTCCCAA GGTGGCTTGA CTGTGGGCCC TACTGTCTCA
  TCCCTTCTGG GAGCCACGTA CAAGCACAGT CAACACACAC ATATCCCCGG CCCCCTATCA
  CACCCAACAC GCTGCTGTTA GATCTTTTTA CTGCCCTGCC CATGAGAAGG AAGTCTTCAC
  R
  TTGCTCCAAC ACTGACTAGT GCCCAAGTTT CAGGAAAGGC CTGTTGACTG CCTGTGTGAA
  GTTTTGTGAA CCAGTCCCCT AGCCACAGCT ACCTATACGC CTGTAAGTCG AGGCTTCATT
  GTAGTGTACC AGGCCTTAAG GGTAGCTTAG TCTCGCCTGA CTCCTCTAGC CTCAGGTCTC
  CACAATCTCG CCTCCATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39311003	mCV25401753	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148481912	ENSMUSSNP5200328	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss325085114	CHEV_15_100878526	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31640863					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100945976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	483 bp distal
Rr509881	regulatory region 509881	1247 bp distal
Rr509882	regulatory region 509882	208 bp distal
Tmdd1	transmembrane and death domain 1	698 bp upstream
Tssr136507	transcription start site region 136507	719 bp upstream
Tssr136508	transcription start site region 136508	710 bp upstream
Tssr136509	transcription start site region 136509	691 bp upstream
Tssr136510	transcription start site region 136510	666 bp upstream