rs31640994 SNP Detail

Summary

• ID
  rs31640994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24098164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACATGG AGATCAGCTC
  TGGGGACAAG CACGCATGTG TGCTTGTGTC TTGAAATGCA GATCAGTGGT AGAGCACATC
  CTACATAGCA AGGCCCTCTC TCTTTTCTCA GTACAGAAGA GAATGGGAGA GAATAACGAA
  AAGCCGAGGG GGTGGGGAGA GCCCAGCAGT CCTGAGGCCA AGGCAGGTGG GTTTCTTTGA
  R
  TTCTAGACCA GCCTGGTCTA CACAGTAAGA CCCCACCTCA AAACAAGAGA GCTGCCTTTA
  ATCCCAGCAC TTGGGAGGCA GAGGCAGGCG GATTTCTGAG TTTGAGACCA GCCTGGTCTA
  CAGAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC CCTGTCTCAA AACAAACAAA
  CAAACAAACA AACAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46053595	mCV25416634	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148598571	ENSMUSSNP6502551	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31640994					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24098164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	447 bp proximal
Gm74022	predicted gene, 74022	272 bp downstream
Rr643435	regulatory region 643435	1356 bp distal
Rr643436	regulatory region 643436	490 bp distal
Rr643437	regulatory region 643437	390 bp proximal
Rr643438	regulatory region 643438	891 bp proximal
Rr643439	regulatory region 643439	1186 bp proximal
Rr643440	regulatory region 643440	1834 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	942 bp upstream
Tssr64959	transcription start site region 64959	867 bp upstream
Tssr64960	transcription start site region 64960	935 bp upstream
Tssr64961	transcription start site region 64961	1074 bp upstream
Tssr64962	transcription start site region 64962	1220 bp upstream
Tssr64963	transcription start site region 64963	1238 bp upstream
Tssr64964	transcription start site region 64964	1274 bp upstream
Tssr71075	transcription start site region 71075	1119 bp downstream