rs31641136 SNP Detail

Summary

• ID
  rs31641136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTATACT ACGGGCTGTT
  TACTTATGTT AATGTCAGCA CAAGAGCAAA CTTCACCCTA ACAGTAAAGG CCCACTCACT
  ACCCAGAACC GCGAAAACAC CACAAAAATG AATCTTACCT TAACACTTCC TCCACTGTTC
  AACAGCAACG GGTCCCGGCG TTTCCTAGAA ATATTTCAAT ACTAGTTTAG AAAACTGAAG
  Y
  CCATTTTTCT AGCGTCGTGT AGACTCTTAC AATCTTAGAA TGTCACTTGC TCAAGTCAGA
  ATCTGGTACC AATGAAATGG TGACAGCTTT GCCAATAACA AGAACATGCT CTTCCATGGC
  TAGGAAGGGA GACTGCCACA GGCGGCAGGT CCCAAAGATA CATGGAGTTT CACAGCCCAA
  AAATCTAGTG TAACCCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45554344	mCV24054461	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss135766564	ENSMUSSNP1934655	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320920395	CHEV_3_123210817	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31641136					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	39 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	1302 bp downstream
Rr397991	regulatory region 397991	865 bp downstream
Rr584523	regulatory region 584523	980 bp distal
Rr584524	regulatory region 584524	845 bp distal
Rr584525	regulatory region 584525	475 bp proximal
Rr584526	regulatory region 584526	1020 bp proximal
Rr584527	regulatory region 584527	1411 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	38 bp downstream
Tssr31551	transcription start site region 31551	651 bp upstream
Tssr31552	transcription start site region 31552	689 bp upstream
Tssr35502	transcription start site region 35502	431 bp downstream
Tssr35503	transcription start site region 35503	1016 bp downstream