rs31642076 SNP Detail

Summary

• ID
  rs31642076
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:51279686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTATGG GAGGAAGGCT
  TTAGTCACCT CTGTAGAGGA AGTAAGATGG GATTTCAGAG GACAATTCCT TTTCAAATTT
  GTAATGTTTT ACGATGAGGA CATATTTAAA AGAGTGATAA AAAAATTTTG GAGCAAGTTA
  ATTTTCTTTT AAGTAATAGA GGACATGTGA GACTCAGAGC AGTTTAGACT CTTACACATA
  K
  AGAGTTACCC ACAGTGTGTT TGCCCTGCAT TTGGGAATAT GGCAAGACTT TAATTCCAGG
  GACATAATTG AATATTTTTT GCAAGTCATA AATAAAGAAG GCCAAGGAAA TGTAGTGGAT
  TTATTTTCAA TGTATCACAA TGTAACTGTG TGTGCCAATA TAATTTAAAC CTTTGTTGCA
  AGTTCCCCTA GCTGCTTCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46053488	mCV23707902	ABI	CRAMUS_MOUSE	f	SNP	T	G	T					T		T
ss51892400	NES14921736	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		G	T	T	G	G	T	G	G	T
ss149254862	ENSMUSSNP4504442	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31642076					SNP	T	G	T	T	T	T	T	T	G	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51892400	NES14921736	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:51279686 () rs orientation: forward

Symbol	Name	Function Class
Gm45072	predicted gene 45072	1787 bp upstream
Rr647264	regulatory region 647264	1291 bp distal
Rr647265	regulatory region 647265	1220 bp proximal
Slc17a6	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	within coordinates
Tssr66884	transcription start site region 66884	1257 bp downstream