rs31642759 SNP Detail

Summary

• ID
  rs31642759
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132519196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAGGAAC AGGTGGGCTG TGTGGACATG CCTGCCCCTG
  CGCTTAGCTA GGATAGATCT GCATTGATTT TGCTGCTGTA AAACTGCTAA GTCAGGTGGA
  W
  CTCAGTCCAG AAGTGCTGGC TGAGAAACAC AAGGTCCTAC TGCAGCTGCT GCAGGCCTGC
  TGAGAAGAAA TGAGCGGCCG GACTCCTGGT TGGCATTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45553883	mCV25032390	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss135914832	ENSMUSSNP892665	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31642759					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132519196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr375756	regulatory region 375756			within coordinates
Rr585456	regulatory region 585456			1315 bp distal
Rr585457	regulatory region 585457			686 bp distal
Rr585458	regulatory region 585458			776 bp proximal
Rr585459	regulatory region 585459			1272 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant
Tssr31762	transcription start site region 31762			1553 bp upstream