rs31643000 SNP Detail

Summary

• ID
  rs31643000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19307121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCTCCCA CCTCCTATGC
  AAATTCGCTA AATGGGGCCA CACCTGAGCG TAAGCAGCCC GAGGGCAGGA TCTGTTCCCT
  CCGCGGCACC CGTGGGCGGG CGGGTCAGTT TCCTTTTAAT TCCTCCTGGC CTCCTAGCGT
  CCTGCTTTTC AAATTCTAAG AATGTCCATC CGCTCCGGGG CAGCCACCTC CCACCCCGCC
  Y
  GCCCCTCCCT GCGTCAGAGT ACAGTCTCTC TCCAGGCCGT CCCTTCCCCA AAGCTCCAAT
  GCCACCCGGA GCGGCTGACG GGGAAGATGT CCCACGACCA CGGAGAACTC ACCAAGGCCT
  GTCCCTGCAG GCGCTGCTCC TACACCCGCG CCGCCGCCAC CGCCGCCGCC CAGGGCCGGG
  CAGGCGCCGA GCCCCGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46053503	mCV25052839	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148479092	ENSMUSSNP2280247	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31643000					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19307121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	within coordinates
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	239 bp distal
Rr643194	regulatory region 643194	within coordinates
Rr643195	regulatory region 643195	441 bp proximal
Tssr70933	transcription start site region 70933	161 bp downstream
Tssr70934	transcription start site region 70934	176 bp downstream
Tssr70935	transcription start site region 70935	183 bp downstream
Tssr70936	transcription start site region 70936	597 bp downstream