rs31643056 SNP Detail

Summary

• ID
  rs31643056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157269395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTACACT AAGGATTCAT CTCTAGTGCT GTTTTTGTTT
  TTGTTTTTGT TTTCCTTACA GGGTATTTTC TTCACAGCAG CCAGGGTGAT TCTGTTAAAA
  Y
  GTGAATCTGG GCGCTTCATT CCCATGCTTC AAAACCTCCA GCCGCTCCCT CCTTCTCGTC
  AAAGACGACA TCCTGATAGC TCTACTACCC TGGACTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45054524	mCV22693999	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31643056					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157269395 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	within coordinates
Gm71050	predicted gene, 71050	1264 bp upstream
Rr421381	regulatory region 421381	1275 bp distal
Rr421382	regulatory region 421382	1191 bp distal
Rr421383	regulatory region 421383	855 bp distal
Rr421384	regulatory region 421384	1122 bp proximal
Tssr9590	transcription start site region 9590	1169 bp downstream