rs31643179 SNP Detail

Summary

• ID
  rs31643179
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143579180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGG TAGACAGAAT AAAATTAATC
  M
  GAGAAAAAGC TGAAAGCATC CCAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45054726	mCV23583658	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss320010261	CHEV_1_145550572	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31643179					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143579180 () rs orientation: forward

Symbol	Name	Function Class
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component	549 bp upstream
Cpgi835	CpG island 835	within coordinates
Gm69373	predicted gene, 69373	1743 bp upstream
Rr419927	regulatory region 419927	991 bp distal
Rr419928	regulatory region 419928	59 bp distal
Rr419929	regulatory region 419929	509 bp distal
Tssr14091	transcription start site region 14091	645 bp upstream
Tssr14092	transcription start site region 14092	613 bp upstream
Tssr14093	transcription start site region 14093	595 bp upstream