rs31644504 SNP Detail

Summary

• ID
  rs31644504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126623505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAATTTCT GGTAGACGGT CTCCTGTGAA CCATGGCACA
  TAATTTAGTG GTGGTGTTTC CAATGCTGTT GTACTTGCCC CTTAAAGAGT TCTCTCTACT
  Y
  GCCACAAGCT CTTAGCTGCA GCACCCTTGA CCCACATCGG TGAAAAAAAA CCCAACAGCT
  CTGTGCCCCC CTTTTTAGTC CCTGCCCTCC TGGCACCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46053517	mCV25165745	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145877408	ENSMUSSNP3778680	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31644504					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126623505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	847 bp proximal
Gm31749	predicted gene, 31749	938 bp upstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Rr166710	regulatory region 166710	within coordinates
Rr368440	regulatory region 368440	29 bp upstream
Tssr74905	transcription start site region 74905	566 bp downstream
Tssr74906	transcription start site region 74906	748 bp downstream
Tssr74907	transcription start site region 74907	813 bp downstream
Tssr74908	transcription start site region 74908	1213 bp downstream
Tssr74909	transcription start site region 74909	1510 bp downstream
Tssr74910	transcription start site region 74910	1544 bp downstream
Tssr74911	transcription start site region 74911	1612 bp downstream
Tssr74912	transcription start site region 74912	1801 bp downstream
Tssr74913	transcription start site region 74913	1894 bp downstream
Tssr74914	transcription start site region 74914	1915 bp downstream
Tssr74915	transcription start site region 74915	1963 bp downstream
Tssr74916	transcription start site region 74916	2000 bp downstream