rs31644864 SNP Detail

Summary

• ID
  rs31644864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33571071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTTCTT TTTCTAAGTC
  AGGCAGGTGA GGCTGCAGAA AGGAAGAGAT CTGGTAGGTC AATTACAGTT TTGTGATTGC
  TCCCGCTACC GTGACTGCAC ATCCACCAGG GCCAGTCACG AGAGGACAGC CTCTCACACT
  CTTGGTAGCA TCCACTCAAC CTACAACCCT GAAGAAGAAA GCCACACTCA AGACACAAGG
  R
  AAACAAGTCA GTCCAGTCTA GAGAAGAACA TTCCAGGAAA CAAAGTACCG ACACCTTCTT
  AGAACATGGA AATAAAAACA ACTCCACCAG AGCTACCTCG CCAAGGAGCA TGTTGAAAGT
  CCAAAATAGC ACCATTCATC AGTGTCTCAG GCCCTGTGGC AGCGTCTCAG TCACTTACCA
  CAAGGAAACA ATGAGTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49261010	NES12729862	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31644864					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49261010	NES12729862	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33571071 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	within coordinates
Rr535500	regulatory region 535500	1717 bp distal
Tssr152756	transcription start site region 152756	286 bp downstream
Tssr152757	transcription start site region 152757	316 bp downstream
Tssr152758	transcription start site region 152758	603 bp downstream
Tssr152759	transcription start site region 152759	723 bp downstream