rs31645699 SNP Detail

Summary

• ID
  rs31645699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33595757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGAAATG GCACTGCATT
  ACATAACCTT CCGTGTTTTA AAAAAAAAAA AAAAAAAAAA CCTACACAAG GGAGAAAGTC
  AGGAATATAC ACCATTATGC CCTCTCCCCA AAGCAAATAA ACATTAATGT ACATGCTGCA
  GTGGTTTCCC GCTCCACCTT TATCCCATTA GAACACAACT CTTTTGTTAA TGCAAGTTAA
  R
  GAAAAATTCA GATGAATGGA AAAACTAGAA GTTCTCCAAA CGAGTATCAG AGGCACTAAG
  AGTTTTCCCA TAATGTTGTT ATAGAAACAC AAATGCAAAT CAGGTTATTA GCGGCGTCGA
  GAAAAAAAGT AGTCATTTAT CTTTAATGCT CCCGCACTCC AAGTTCAACT GCTTTATAAG
  AACATGCAAG GAGGAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49260848	NES12728913	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31645699					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49260848	NES12728913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33595757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	799 bp proximal
Gm10549	predicted gene 10549	1459 bp upstream
Nrep	neuronal regeneration related protein	within coordinates
Tssr152760	transcription start site region 152760	160 bp upstream
Tssr152761	transcription start site region 152761	711 bp downstream
Tssr152762	transcription start site region 152762	746 bp downstream
Tssr152763	transcription start site region 152763	911 bp downstream
Tssr152764	transcription start site region 152764	938 bp downstream
Tssr152765	transcription start site region 152765	1059 bp downstream
Tssr152766	transcription start site region 152766	1117 bp downstream
Tssr152767	transcription start site region 152767	1154 bp downstream
Tssr152768	transcription start site region 152768	1303 bp downstream
Tssr152769	transcription start site region 152769	1661 bp downstream