rs31645700 SNP Detail

Summary

• ID
  rs31645700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33595344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATATGT TTAAATACAG
  TAGACACACT GCTTCACCAC AGGTCAGCAA ATGCAAAATG CCTCCTTAGA GGTCACAGAC
  AAATAACCAC TTTGTGTGCT GAAGATAAGT CCCACGCAAA TTATTCTAAA CGTTTCCCTG
  AAGGGGCTTT CCAAGTGGTC TACAGGTTTA CATAGGGGAC AAAGGAATGC CTGGCACCTG
  R
  CTTTGCACTC CCGGGCTATT CTTAGTGTCT GGTTCATCTT TAAATTGCAG TTCAAAAGGT
  TTAGCAACTT AAAAGTAGAC CCAAGTGATA AAAATAGATT GTTTTCTGGC TGCTCTTTGT
  TCCCAGACAT ACTACTGGCA GTATATTTGC AATCAAGACA GCAGAGCAAG AATCAGCCTT
  CCACCGTAGT GTAATGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49260849	NES12728912	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31645700					SNP	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49260849	NES12728912	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33595344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	1212 bp proximal
Gm10549	predicted gene 10549	1872 bp upstream
Nrep	neuronal regeneration related protein	within coordinates
Rr352671	regulatory region 352671	within coordinates
Tssr152760	transcription start site region 152760	247 bp downstream
Tssr152761	transcription start site region 152761	1124 bp downstream
Tssr152762	transcription start site region 152762	1159 bp downstream
Tssr152763	transcription start site region 152763	1324 bp downstream
Tssr152764	transcription start site region 152764	1351 bp downstream
Tssr152765	transcription start site region 152765	1472 bp downstream
Tssr152766	transcription start site region 152766	1530 bp downstream
Tssr152767	transcription start site region 152767	1567 bp downstream
Tssr152768	transcription start site region 152768	1716 bp downstream