rs31645784 SNP Detail

Summary

• ID
  rs31645784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100825366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCACAGG TCTCACAGTT
  TGAGACCCAG TCCATCGCAG TGGGTTAAGT ATGGCAGCCT AGTGGCTCTC AGCACTGGCA
  GGGGTAGGAG GCAGCTTGCT CACATCTGGG CAAGTCAAGA AGCAGAGAGC ACAGTGGAAT
  TCGGGCAGCT AGAAAAATCT CAAAGCACCC CACCCAGCCA CAGAGGGCCT TTTCCTCCAG
  Y
  GAGTCTCTAC CAACGAAAAG TTGACAATCC TCCCCACACA ACACCACCAA CTAGGACTGA
  GTGGTCAGAC AATGAAGCTA TGGGAGACAC TCCATTCAAG CCACACTGGT CTTCTCCAGA
  ACCTTAGCTA AAAAGAAGAG GAAAGGGCGG CTGAGGAGCA CAGACAGAAG GTGAAACTGA
  AGTGTGAGTG TGAGAAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45555354	mCV25367939	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss320850259	CHEV_3_100721973	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31645784					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100825366 () rs orientation: forward

Symbol	Name	Function Class
Rr581925	regulatory region 581925	833 bp distal
Rr581926	regulatory region 581926	1092 bp distal