rs31646524 SNP Detail

Summary

• ID
  rs31646524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18912590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTCATCT CTGTCCTGTA ATCCCCATGT CGGCCGCCAG
  GGGTCATAGA AGCTCTGTCC TTAGGGCTTC TTGGCGGGGC GAACCCGTTG GAGAGGAGAA
  Y
  GAGGGGAAGG GATGAACAGG ACTGGACCTT TTGAGCTTGA AAAGTCTTGG ATACAGCGAG
  CGAATGTTGG TACCCGTGAC AGAATATTGT CGTTCATCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46053549	mCV25048398	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148469615	ENSMUSSNP2084418	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322116609	CHEV_7_19764014	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31646524					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18912590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	1855 bp distal
Cpgi18451	CpG island 18451	371 bp distal
Cpgi18452	CpG island 18452	292 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Rr155272	regulatory region 155272	within coordinates
Rr167138	regulatory region 167138	within coordinates
Tssr64794	transcription start site region 64794	1972 bp downstream
Tssr64795	transcription start site region 64795	426 bp downstream
Tssr64796	transcription start site region 64796	316 bp upstream