rs31646547 SNP Detail

Summary

• ID
  rs31646547
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37728214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGCCTTCC TGGGAGAGAA CATGACACAC TCTGCTTTCA
  GTACCTCCTA TCCCAAAGCT ACATAGACTG TGGCAGGACA TTGAGCATGG CCCCGGGCGC
  W
  TTGAAAATGT GAGTGACTGC ATTTGACCAG AAGACACGTT GTCAAGGCAA CCTGTGACAA
  AGCATCCTCG TGGAGCATGG CTGGGTACAG CAGGCAGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45555370	mCV22777433	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss134810685	ENSMUSSNP4824159	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320711641	CHEV_3_37572987	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31646547					SNP	A	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37728214 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	within coordinates
Rr406863	regulatory region 406863	within coordinates
Rr575537	regulatory region 575537	615 bp distal
Rr575538	regulatory region 575538	within coordinates
Rr575539	regulatory region 575539	910 bp proximal
Tssr33054	transcription start site region 33054	1640 bp upstream