rs31646777 SNP Detail

Summary

• ID
  rs31646777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172198410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAGCCAC CTTTCCTGCA CCCATCCTGG ATTCTGAGAA
  ATTCAATTTT GGAAATACTG TCTAATACTC TGGCCCTGTC CTTTGGGCAG CTCTGTCCTG
  R
  AAAGATATGT TTTAGTGTTT CCTGGGAATA GGAAGACCTT AACCAATGCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45054671	mCV24593850	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss120009862	PARCsnp_1.19009	PARC_SEQ	INBRED	f	SNP			A	G
ss120013149	PARCsnp_1.08842	PARC_SEQ	INBRED	f	SNP			A	G
ss320124592	CHEV_1_174300974	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31646777					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172198410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	1387 bp distal
Cpgi1046	CpG island 1046	874 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	1854 bp distal
Tssr10190	transcription start site region 10190	358 bp downstream
Tssr10191	transcription start site region 10191	142 bp downstream
Tssr10192	transcription start site region 10192	21 bp upstream