rs31647172 SNP Detail

Summary

• ID
  rs31647172
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88626221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC GGCTACTTCT TGTCTTTTTA
  K
  CGAACTGCAT GGGAGTTCTT CATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45555284	mCV23052857	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss320836105	CHEV_3_88522836	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31647172					SNP	G	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88626221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	1674 bp distal
Rit1	Ras-like without CAAX 1	within coordinates
Rr397776	regulatory region 397776	1977 bp downstream
Rr579875	regulatory region 579875	1998 bp distal
Rr579876	regulatory region 579876	784 bp distal
Rr579877	regulatory region 579877	7 bp proximal
Rr579878	regulatory region 579878	264 bp proximal
Tssr30020	transcription start site region 30020	1993 bp downstream