rs31647185 SNP Detail

Summary

• ID
  rs31647185
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189857896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA GCATGAGCTT TTGAGGGGGT
  M
  GGGTAATTTA GGATTTCACT GAAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45054576	mCV23934079	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	A
ss146496121	ENSMUSSNP4500540	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		A
ss320192330	CHEV_1_191949578	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31647185					SNP	A	A	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189857896 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	within coordinates
Prox1	prospero homeobox 1	Intron
Rr425914	regulatory region 425914	333 bp distal
Rr425915	regulatory region 425915	32 bp distal
Rr425916	regulatory region 425916	1578 bp proximal