rs31647343 SNP Detail

Summary

• ID
  rs31647343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58625941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC GATAAGACCG GGAGAAGATC
  Y
  GGGATCTAGC TAGGGAGCGC CGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45055143	mCV23020503	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss149138770	ENSMUSSNP6830091	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31647343					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58625941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	within coordinates
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	459 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	Intron
Rr411457	regulatory region 411457	602 bp distal
Rr411458	regulatory region 411458	388 bp distal
Rr411459	regulatory region 411459	563 bp distal
Rr411460	regulatory region 411460	within coordinates
Tssr93	transcription start site region 93	141 bp downstream
Tssr6781	transcription start site region 6781	381 bp downstream
Tssr6782	transcription start site region 6782	336 bp downstream
Tssr6783	transcription start site region 6783	157 bp downstream
Tssr11786	transcription start site region 11786	464 bp upstream