rs31647396 SNP Detail

Summary

• ID
  rs31647396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41581165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGCTTAA ATGCTGTCAA TGTCTACAAA TTCTTAAAAC
  TATAGTTAAA AATAAATTAC AATTATGCAC TCAAATACAT GACAACATAA TTTTACAAAA
  Y
  ACATAATTTA TTACATTTAT GAATTCATAG TAAAATAGAA TCTTAAGAAT TATAAAAATG
  AATTAAGAGT AAAAAATGAG ACATTAAATC TCCAAATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss45555675	mCV24365075	ABI	CRAMUS_MOUSE	f	SNP	C	T			T	C
ss60397259	NES15898147	PERLEGEN	MM_PANEL2	f	SNP		T	T	T				C	C
ss135042559	ENSMUSSNP4320057	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				C
ss320728936	CHEV_3_41430652	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs31647396					SNP	C	T	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397259	NES15898147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41581165 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	within coordinates