rs3164769 SNP Detail

Summary

• ID
  rs3164769
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72759260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGACTG CAGTGTTCAT
  ACATGTATTT TCTGCAAACG CCACCACCTA AGCCTCTGCA CAAGAAAGCA GGCCCATTTC
  CTCCAGAGCT TATGAGGGGC TGATAACCCT AGTAGCCTCC AGCCTCCTTC TAAAGCTGCT
  TTTGAAAACT AGATAGGCCT TCCGAATGCT CGCACGAATG CACAGGGTGT AGGCCTCCAT
  K
  TACTCTCAAA AGGCCCACAA GAGCGACTCC TAGAGGGCGG GAATCCAGGC CAAAAGCAAA
  TACAGGTCTC CACAGAGCAC GTCCAGGCCT TACCCAGAGA AAGTTCCAGA ACCAGAAAGT
  CTCTCCCGAA GCCAAAAAAG GGACCTCCCT GCATCCCTAG CAAGCCACAA CGCCCAAGTC
  CACAGCGCCA GGTGGCTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38364552	NES09695305	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	T	T	T	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3164769					SNP	G	T	T	T	G	T	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364552	NES09695305	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72759260 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	943 bp upstream
Bcap31	B cell receptor associated protein 31	within coordinates
Cpgi22777	CpG island 22777	427 bp proximal
Cpgi22778	CpG island 22778	1405 bp proximal
Gm61833	predicted gene, 61833	1958 bp downstream
Rr406105	regulatory region 406105	747 bp upstream
Rr691928	regulatory region 691928	within coordinates
Rr691929	regulatory region 691929	20 bp proximal
Rr691930	regulatory region 691930	262 bp proximal
Rr691931	regulatory region 691931	511 bp proximal
Tssr161281	transcription start site region 161281	923 bp upstream
Tssr161282	transcription start site region 161282	1058 bp upstream
Tssr161283	transcription start site region 161283	1099 bp upstream
Tssr161284	transcription start site region 161284	1132 bp upstream
Tssr161285	transcription start site region 161285	1285 bp upstream
Tssr163562	transcription start site region 163562	491 bp downstream
Tssr163563	transcription start site region 163563	544 bp downstream
Tssr163564	transcription start site region 163564	788 bp downstream