rs31648029 SNP Detail

Summary

• ID
  rs31648029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:97839950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGTCTTG ATATCGAAAC TACATTTATT ACATAATTGT
  TTTGCATCTG GAAAAGGATG TATTTTCTTA CTAATTTAAT CAATTATCTA TCTGTGTGTG
  R
  GTCTCTGTGC AGTCTAACAG TTCTCAAGAA GGTATTCTGC CCCCTAAAGG AATGTTTTGG
  AATATGTAGA GAAAAAAATT TGATATGCCC AAGCTATAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46074471	mCV23541638	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss47075109	NES11612205	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		G		A	A	A	A	G
ss145464713	ENSMUSSNP20427	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31648029					SNP	A	A	A	A	A	G	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47075109	NES11612205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:97839950 () rs orientation: forward

Symbol	Name	Function Class
B3gnt6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	1672 bp downstream
Rr381185	regulatory region 381185	1548 bp downstream
Rr651557	regulatory region 651557	34 bp proximal
Rr651558	regulatory region 651558	1092 bp proximal
Rr651559	regulatory region 651559	1298 bp proximal