rs31648032 SNP Detail

Summary

• ID
  rs31648032
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:97840158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGTTTTT CTTTTGTTTA AATTTTATAT GAAATTAAGC
  AATATATTGA TTTTTTTAAA AGTATGATTA CATCATGTAA GAACTTTATT CCAAGGGTGA
  M
  ATCCTTATAG AAAGACCTAG AAAAGCAGCA CTTGGAATTC CAGGGCAGGA GATGAGGAAT
  TTGGGGCCAT TCTCAGCTAG GAAGCCAATT GTGGGCAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46071367	mCV23541655	ABI	CRAMUS_MOUSE	f	SNP		A					A		C
ss47075112	NES11612206	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C		C	A	A	A	A	A	A
ss145464728	ENSMUSSNP5419299	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31648032					SNP	A	A	A	A	A	C	A	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47075112	NES11612206	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:97840158 () rs orientation: forward

Symbol	Name	Function Class
B3gnt6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	1464 bp downstream
Rr381185	regulatory region 381185	1756 bp downstream
Rr651557	regulatory region 651557	153 bp distal
Rr651558	regulatory region 651558	884 bp proximal
Rr651559	regulatory region 651559	1090 bp proximal