rs31648360 SNP Detail

Summary

• ID
  rs31648360
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33573416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGAAGCA GAAACAAAAA TAGTCCCTAC CCAACCTGCC
  TTTAACTATC ATCTATGGGA GGTACCAAAG TAACGGACAA CAGACCATGC CAGTAGGTCA
  K
  GCAGAGATAT GCTATTGAAA GACCCTGAGG GCCAAAAAAC TGAACCCCCT TCAATGAGAC
  AAACTCCCAG AGAGATATGG CTCTCTGCAC CTCCTTATTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49260997	NES12729760	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31648360					SNP	G	G	T	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49260997	NES12729760	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33573416 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	within coordinates
Tssr152758	transcription start site region 152758	1727 bp upstream
Tssr152759	transcription start site region 152759	1603 bp upstream