rs31648362 SNP Detail

Summary

• ID
  rs31648362
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:33573252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTTAGT GTGGCTCCAA
  ACTTAGCATA CTGATGTGTG TTGGTTTTTG AGACTCAGTC CCACTATCTC TTGACATCCA
  GGAAAAAACA CACTACAAAA AAACAAAAAC AAACTCTGGA ATATTTCCGA TCTGAACTTA
  GCTCTTCTAT TTTTATTTAA TTCATTGTCT TCCTCCTGTA GTCCCAAACA CTCACACACT
  W
  CAGCACTCCT TATTGTTCAG TACTCCTCTA TGCCTGCACA CGCTGCTGGC ATTTAAGTCT
  ACAGAGAGAA GCAGAAACAA AAATAGTCCC TACCCAACCT GCCTTTAACT ATCATCTATG
  GGAGGTACCA AAGTAACGGA CAACAGACCA TGCCAGTAGG TCATGCAGAG ATATGCTATT
  GAAAGACCCT GAGGGCCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss49261000	NES12729757	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs31648362					SNP	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49261000	NES12729757	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33573252 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	Intron
Tssr152756	transcription start site region 152756	1880 bp upstream
Tssr152757	transcription start site region 152757	1851 bp upstream
Tssr152758	transcription start site region 152758	1563 bp upstream
Tssr152759	transcription start site region 152759	1439 bp upstream