rs31648576 SNP Detail

Summary

• ID
  rs31648576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:33572484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTAAT TTCAATGGGT
  GATGTGATGG AGGGTTGACA GTATATTTTC TATTACACAA TAAGAATACT TTAAAATATA
  GCACAATACT TAAATCTTTT CAATGTAAGC CTTACTCTAA AAGCAATTAG CACACTTCAT
  CCAAGTGCTG ACAGTCAGGA CTAAAACGGT ACCCAAGATG GAAGTGTTTG AGAGATACAC
  R
  GTATAAAAGG ATCTCAGATA GCAGCTACAG GAAAGAGGAG GAGAGTGAGA AACCACATTC
  AGAGGCTCCC GAGACTCTGT AAGTCCCTCC TTCCTCAGCG GATGGCTGAC TATAACGATG
  AGCCTGACAG GAGATAAGCA TGCTGTGCTG CTCCTGCTGG CACACACGAG GCTGGCAGCG
  AGGTGCAGCC TCCCTCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49261004	NES12729753	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31648576					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49261004	NES12729753	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33572484 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	Intron
Tssr152756	transcription start site region 152756	1112 bp upstream
Tssr152757	transcription start site region 152757	1083 bp upstream
Tssr152758	transcription start site region 152758	795 bp upstream
Tssr152759	transcription start site region 152759	671 bp upstream