rs3164876 SNP Detail

Summary

• ID
  rs3164876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:89269317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCAATGCCA TCTGTATGCC TGCCCAGCAG CTCAGGCTGG GTGTGGGGCA TGTATAGCTG
  CCACGCAGAG CAGGCTCTTC ACAGCTGATC TGTAGTCCTC GCCATGCTCC TGGGCACTCT
  GGAGGCTGGC GGGCCCCTCT GGGGCTGGGA TGGTGATGAC GGAGATGATG ACTGGGAGGC
  GGTTGTACTC ACCTTGCTGG CACTAGCGGT GGTAGCCACC TTAGCACTGG CTTTGCACTG
  GTTTGGCTCC AGGGAGGAGC AGGAGACAGC ATCTGCAGCC CCAGGTGTGC AACCTGCTCA
  R
  GCAGGAGGAG CCAGGCAGGC CCTGCACCCA AAGCCCAAGG ACAGTGAGGG GCAGAGCAAG
  GGACAGCAGA CACCAGAGGC TCCTGGAGAT GTCCAGAGGA GGTCTGCTGC AGCTAGGACC
  CAGGACCCAG GGCCATCGAT AGACAGAAGT ATGGCTTCAG ATGCCCGGCT GCTGCACAAG
  ACAACTGGAG AGGTGACCAC CAGAGGGGCC ACCCTAGCAG CCCTGGGAAA GAAAAGAAAG
  GAGCCAGCCA AGCCAGAAAC TTTCTCCCCA GGACACCGCA AAGCAAAGGA TATTCCTGTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8569798	WI_WGS_15_90227584	WI	MOUSE	f	SNP		A	G
ss39304239	mCV24980861	ABI	CRAMUS_MOUSE	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs3164876					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:89269317 () rs orientation: forward

Symbol	Name	Function Class
Gm62017	predicted gene, 62017	within coordinates
Klhdc7b	kelch domain containing 7B	within coordinates
Tssr4689	transcription start site region 4689	247 bp downstream
Tssr132668	transcription start site region 132668	230 bp downstream
Tssr132669	transcription start site region 132669	215 bp downstream
Tssr132670	transcription start site region 132670	204 bp downstream