rs31649257 SNP Detail

Summary

• ID
  rs31649257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160760158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATGCTAC GATGAAAAGG GTATTTTTTC TCTCTCTGGA
  CTTACTGCCA AACATATCTA ACTCCAGTCT CCTTGTGAGA AAAATGAGAT CCCATCAAAA
  R
  TCAGTATACA ACACGTATCC CCAGTAGTCT TTAAAACCTC CAATCATCAA AACCCAAAAG
  GAACCTTATA AAGAGTGACA CACAATCAAG TATTCTGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45055424	mCV24552937	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31649257					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160760158 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	1417 bp proximal
Rr421729	regulatory region 421729	1430 bp proximal
Rr421730	regulatory region 421730	1727 bp proximal
Rr421731	regulatory region 421731	1964 bp proximal