rs31650036 SNP Detail

Summary

• ID
  rs31650036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95036150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA AACATGAGTG GAGCTGAATA
  R
  CAGGGAGACA GACAAGTCCT TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45556688	mCV24559785	ABI	CRAMUS_MOUSE	f	SNP		A	G		A		G
ss46771781	NES10666965	PERLEGEN	MM_PANEL2	f	SNP	A			A		G		A		G	G	A	G		G
ss135510047	ENSMUSSNP2992695	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
ss320841128	CHEV_3_94932761	CHEVERUD	SCREENING_POP	f	SNP									G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31650036					SNP	A	A	G	A	A	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771781	NES10666965	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95036150 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	343 bp proximal
Scnm1	sodium channel modifier 1	880 bp downstream
Tmod4	tropomodulin 4	Intron
Tssr30497	transcription start site region 30497	1379 bp downstream