rs31650541 SNP Detail

Summary

• ID
  rs31650541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:117844744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAT CGCCAGTGCT GTAAAATAAT
  R
  ATCGTTACTT CAATAAGATT GCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46054234	mCV22909253	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss145772546	ENSMUSSNP2553952	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31650541					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:117844744 () rs orientation: forward

Symbol	Name	Function Class
4930583K01Rik	RIKEN cDNA 4930583K01 gene	within coordinates
Cpgi19616	CpG island 19616	1134 bp distal
Rr400585	regulatory region 400585	1463 bp downstream
Rr654423	regulatory region 654423	1895 bp distal
Rr654424	regulatory region 654424	1925 bp distal
Rr654425	regulatory region 654425	1702 bp distal
Rr654426	regulatory region 654426	711 bp distal
Rr654427	regulatory region 654427	1295 bp distal
Smg1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	1851 bp upstream
Tssr68712	transcription start site region 68712	1650 bp downstream
Tssr74429	transcription start site region 74429	1985 bp upstream
Tssr74430	transcription start site region 74430	1880 bp upstream
Tssr74431	transcription start site region 74431	1835 bp upstream