rs31650668 SNP Detail

Summary

• ID
  rs31650668
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127311687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTCCC TGGCCTCTCT
  TTGTCTTCCC CAAAAAGGAA GTCCTGCCTG CATTCTTCTC CTGCCAGCCT TGCACCTTTC
  CTCTCAGGTT TCCCAGCTTT TCCCTCCAAA GCAGCCAATA AACAGGCTCT ACCTCAGGTC
  TGAGCCTGAG TCTCCTCCCA ACAGGACACA GAACTGCCTT AAAGGCCCAA GTTCCCATTC
  M
  CTGTGCCAAC ACCTGCCTCC CAATTCTGGC CCCTTCCCAG TCTAAGCTCA CAAGCCGGTT
  ACTGAGCTCT GGGCCAAGGA ATTTTGACTG AAAGTAATGG TGGGAAGGAA ATATTTGGGG
  TCTGAACTAT GATTGGCCGA GCCCGAGCCA CGCCCCTAGC CCTTTCCCCC TTTTTCCCCC
  TCCCCTCCTC CTCCCCCGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46054241	mCV24290436	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	A
ss145882065	ENSMUSSNP1380657	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31650668					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127311687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19761	CpG island 19761	548 bp proximal
Ctf1	cardiotrophin 1	221 bp upstream
Rr655878	regulatory region 655878	764 bp distal
Rr655879	regulatory region 655879	within coordinates
Rr655880	regulatory region 655880	440 bp proximal
Tssr69270	transcription start site region 69270	194 bp upstream