rs31650833 SNP Detail

Summary

• ID
  rs31650833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAATCATA CTTACAAAGC ACTCATACAT ATAAAAGAAA
  ATGAAATCTT TAAAACATGT AAGCGGAGGG CTGGGCTAAG GCTCTGTGGT AGGGAGCTTA
  R
  CAAGCCTACT TAAATTCAGT CCCCAATACC CTACCTCAAA TGTATGAATG CTGAAACCTT
  AACTAAAGGC CCAGTGAGGT GGCCTGCTGG GTAAAGGCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46054156	mCV25416668	ABI	CRAMUS_MOUSE	f	SNP			G		A
ss60983368	NES16154602	PERLEGEN	MM_PANEL2	f	SNP	G			A		G	A	A		A	G	G
ss148598542	ENSMUSSNP5473271	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322120418	CHEV_7_25182792	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31650833					SNP	G	G	G	A	A	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60983368	NES16154602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1413 bp proximal
Gm74022	predicted gene, 74022	1238 bp downstream
Rr643435	regulatory region 643435	390 bp distal
Rr643436	regulatory region 643436	455 bp proximal
Rr643437	regulatory region 643437	1356 bp proximal
Rr643438	regulatory region 643438	1857 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1908 bp upstream
Tssr64959	transcription start site region 64959	1833 bp upstream
Tssr64960	transcription start site region 64960	1901 bp upstream