rs31651254 SNP Detail

Summary

• ID
  rs31651254
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172156005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACCCGAC ATTCCATTTT TAAACTTTGG AGCCAAGTGT
  TCTGTAGCCA GCAGACCTTT GGAGGGTGTG TGTATGTTAA AGAAAGGCAC AAGGAAAAAA
  M
  CCCAAAAAGA TGGTTTGTAA CCCCACACAC TTATTTTCCA TGGAAGTCAG GAGACATGAC
  CTGGGAACAC TTCGGCAATG GCAGATTAAG ATCTTCCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45055785	mCV24595279	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss120009207	PARCsnp_1.18682	PARC_SEQ	INBRED	f	SNP			A	C
ss120012416	PARCsnp_1.08475	PARC_SEQ	INBRED	f	SNP			A	C
ss146188057	ENSMUSSNP4425738	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320124241	CHEV_1_174258569	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31651254					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172156005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1483 bp distal
Gm70847	predicted gene, 70847	1512 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423530	regulatory region 423530	1578 bp distal
Rr423531	regulatory region 423531	within coordinates
Rr423532	regulatory region 423532	834 bp proximal
Tssr15213	transcription start site region 15213	823 bp downstream
Tssr15214	transcription start site region 15214	879 bp downstream