rs31651500 SNP Detail

Summary

• ID
  rs31651500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAGGTTTA GTGGTCAAAA AAAATCACCT AAATTTTGCT
  TATACTTCCT CTAGTAACTC AAAGACAGGA ATAATATTCT TAAAAAGATA CGTTTTTTTT
  K
  GGGGGGGGGG TCTGGGGGAC TTTTGGGATA GCATTTGAAA TGTAAATGAA GAAAATACCT
  AATTAAAAAA ATAAATTTAA AAAAGTTTAA AAAAAAGAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45556492	mCV25118424	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss135184756	ENSMUSSNP1347463	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31651500					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	700 bp distal
Gm65558	predicted gene, 65558	1226 bp upstream
Rr397672	regulatory region 397672	1025 bp downstream
Rr576829	regulatory region 576829	1265 bp distal
Rr576830	regulatory region 576830	772 bp distal
Rr576831	regulatory region 576831	312 bp distal
Rr576832	regulatory region 576832	238 bp proximal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1087 bp downstream
Tssr29132	transcription start site region 29132	1051 bp downstream
Tssr29133	transcription start site region 29133	1019 bp downstream
Tssr29134	transcription start site region 29134	995 bp downstream
Tssr29135	transcription start site region 29135	832 bp downstream
Tssr29136	transcription start site region 29136	808 bp downstream
Tssr29137	transcription start site region 29137	786 bp downstream