rs3165217 SNP Detail

Summary

• ID
  rs3165217
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148710634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA GCCAAGCATT GGGATCTGAG
  A
  AACCCTCCCT GTGCTGGTGG AGCAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148013254	ENSMUSSNP5185627	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321421544	CHEV_4_148000286	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs3165217					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148710634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	within coordinates
Rr100545	regulatory region 100545	1433 bp distal
Rr100546	regulatory region 100546	within coordinates
Rr398860	regulatory region 398860	772 bp upstream
Tardbp	TAR DNA binding protein	within coordinates
Tssr44612	transcription start site region 44612	554 bp downstream
Tssr44613	transcription start site region 44613	579 bp downstream
Tssr44614	transcription start site region 44614	832 bp downstream