rs31652286 SNP Detail

Summary

• ID
  rs31652286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:97841348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCATGC CTTTCTGGAC
  TCCGCTTGGA ATTGGCCACC CGGACACCTC AGCCCAGTTG TCCAGCCTAG CGCCACCAAG
  GAGAGACGGA CCGTGGGTCA GGTGTGCCCC CTGGCGGCAC ATGGGCCAGA AGGCCAAACC
  TGAAAGATAT GCTTGTTCTT CCAGGTGACT TCAGGTGGTG CTGGGGTTCC CTGGACCCAG
  Y
  GGCCTTTCCT GTTCTTGGAC ACTAGAGTAA TCCAGCCTCA GAGACGAGTG AGCAGGCCCC
  AGAGTTACAT AGCAGACCTA AATCTGCTGC CTTCTCACCT TCCTAAACAC GGAATGCCAG
  AATCTTAATA CCTTTACCCC CAAAATGGAG ACAACCTTCT GCCAGGGAAC TGAGAACAAG
  GCATCAAAGC AGGGGATTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47075139	NES11612101	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31652286					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47075139	NES11612101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:97841348 () rs orientation: forward

Symbol	Name	Function Class
B3gnt6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	274 bp downstream
Cpgi19443	CpG island 19443	1413 bp proximal
Rr651557	regulatory region 651557	1343 bp distal
Rr651558	regulatory region 651558	within coordinates
Rr651559	regulatory region 651559	79 bp distal
Rr651560	regulatory region 651560	1332 bp proximal