rs31652521 SNP Detail

Summary

• ID
  rs31652521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT GAAGGCCAAG AGGGCCATCG
  R
  TGAAGCCTGT CTTCTGCTAG CCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46054504	mCV23676594	ABI	CRAMUS_MOUSE	f	SNP	G	A					G
ss47262256	NES11569976	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	G		G	G	G	G		G		A	A	G		G
ss145879537	ENSMUSSNP2606503	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A												A
ss322451440	CHEV_7_134477332	CHEVERUD	SCREENING_POP	f	SNP												A						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31652521					SNP	G	A	A	A	G	G	G	G	G	G	G	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47262256	NES11569976	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932990 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	mRNA-UTR
Tssr69200	transcription start site region 69200	1456 bp downstream
Tssr69201	transcription start site region 69201	237 bp downstream
Tssr69202	transcription start site region 69202	193 bp downstream
Tssr69203	transcription start site region 69203	151 bp downstream
Tssr69204	transcription start site region 69204	within coordinates
Tssr69205	transcription start site region 69205	895 bp upstream
Tssr74988	transcription start site region 74988	1303 bp downstream