rs31652768 SNP Detail

Summary

• ID
  rs31652768
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79976367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG CCCACCTAGT CCGTGCAGGT
  M
  CCCCAGTGCT GAGTGGGGCT CAGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39312426	mCV22873946	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss148213543	ENSMUSSNP6984078	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325030242	CHEV_15_79922596	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31652768					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79976367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	within coordinates
Gm31134	predicted gene, 31134	332 bp upstream
Syngr1	synaptogyrin 1	within coordinates
Tssr132156	transcription start site region 132156	959 bp downstream
Tssr132157	transcription start site region 132157	776 bp downstream
Tssr135418	transcription start site region 135418	326 bp upstream