rs31652913 SNP Detail

Summary

• ID
  rs31652913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12655864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGG TGGTAACCAC AGGACCCGAC
  Y
  CCATTATTTT GGTGAGAAAA TGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46054715	mCV24394722	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148341401	ENSMUSSNP6563798	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss322106838	CHEV_7_13507286	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31652913					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12655864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	359 bp upstream
Rr368230	regulatory region 368230	128 bp upstream
Rr642402	regulatory region 642402	within coordinates
Rr642403	regulatory region 642403	154 bp proximal
Rr642404	regulatory region 642404	439 bp proximal
Tssr64485	transcription start site region 64485	378 bp upstream
Tssr64486	transcription start site region 64486	1017 bp upstream
Tssr70626	transcription start site region 70626	133 bp downstream