rs31653026 SNP Detail

Summary

• ID
  rs31653026
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164509808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGCAAAGA AATCATGCAT AGCAGCAGGA ACAAAACCTA
  AGATGAAATC GGTTGTGAAA ATTGGCTCCC TTAATTTAAT TGGAGTTAAG AGAATTTAGA
  S
  ACCTTGCCTT AACCTAGGGA AATGGGAATG AAAATAGGTT TAGGAGATTA AAGGGAAGGC
  ATTTGGGGAT TTATTTAGTA GAAAGAATTA ACTCATGGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45055608	mCV22791161	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		C
ss60336397	NES15836021	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	C	G	G	C	G	G	G	G
ss145984916	ENSMUSSNP406421	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31653026					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336397	NES15836021	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164509808 () rs orientation: forward

Symbol	Name	Function Class
Gm37184	predicted gene, 37184	within coordinates
Gm37853	predicted gene, 37853	within coordinates
Rr422252	regulatory region 422252	295 bp distal