rs31653263 SNP Detail

Summary

• ID
  rs31653263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:97842301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAGGGA ATGGGGGGGG
  GTTCTCCCCC ATAGAATACT AGGAAAGAAA GCAGTTTTAC CAGCATCTTG ACATTAACCC
  GGTGGTGAGA CCTGTGTTGT CGGAGAACTA CAGGATACGC GGGCTTGTTC CTAGGCTTCG
  AGAGTTAATG AAGATTTGTT ATAGCAGCAA CAGGAAACTA ATATAATGTT CTCACAGATG
  R
  CCACTGTCCA CTCAAACGTG CACTTCCTAA AGCACTGGGG AGGCAAGGCT GTAGCTACTG
  GGACTTCACA GTGCTACAGA AAAATGGCTG TGAAGGTCTT CCCTCTGCTG CCCTTAAGGG
  CCTTTGCTTT TTACTGACTT CACAAGAGCC CTGGAGCATG GTAGAAGCGA GGCTGCCAGA
  CACCCCTTTA GTTCTGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47075157	NES11612011	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31653263					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47075157	NES11612011	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:97842301 () rs orientation: forward

Symbol	Name	Function Class
B3gnt6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	within coordinates
Cpgi19443	CpG island 19443	460 bp proximal
Rr651558	regulatory region 651558	945 bp distal
Rr651559	regulatory region 651559	1032 bp distal
Rr651560	regulatory region 651560	379 bp proximal
Rr651561	regulatory region 651561	1984 bp proximal