rs31653579 SNP Detail

Summary

• ID
  rs31653579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48529397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCTCAG AGCTAGTTTC
  TGCTATGGTA AGTTAGCACT TACCTACACT GGTAAGTTAA GAGCAATTCA TATAGATAGT
  AGAGACTGGG CCCCCTTCAC TTTTAGACAC CAGGCAGTAC ACCATTCTTA AAGAAAGGGA
  TTTGGAAGGC AACAACTCAG AGAACAGAGA TACACTGTTT CCTCAGTAAC TTTGGGAGCC
  Y
  GGGTTAACAA TCCTCTATTA CAACCATGAA ACTAAGGGCT CAGTGTGTAT TTCTGCTGAA
  TCTGCTACTT AGCAGACGAT GATGCGAGGC AGAGGGAGGT CACATGGGGC TGGCACCTGA
  ATTTTCAGTT CAGTATGGTG CCCTCAGGAG GTGCTGATCC AAGGGTGGGG TTTCAGTGAA
  CACTGCCAAG GACAGCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46054612	mCV24996011	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss149208196	ENSMUSSNP4044509	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31653579					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48529397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	834 bp proximal
E2f8	E2F transcription factor 8	Intron
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	1297 bp upstream
Rr400336	regulatory region 400336	2000 bp upstream
Rr646934	regulatory region 646934	1654 bp distal
Rr646935	regulatory region 646935	269 bp distal
Rr646936	regulatory region 646936	20 bp proximal
Rr646937	regulatory region 646937	765 bp proximal
Rr646938	regulatory region 646938	1382 bp proximal
Rr646939	regulatory region 646939	1736 bp proximal
Rr646940	regulatory region 646940	1937 bp proximal
Tssr66766	transcription start site region 66766	1675 bp downstream
Tssr66767	transcription start site region 66767	1669 bp downstream
Tssr66768	transcription start site region 66768	1683 bp upstream
Tssr72628	transcription start site region 72628	1555 bp upstream
Tssr72629	transcription start site region 72629	1497 bp upstream
Tssr72630	transcription start site region 72630	1330 bp downstream
Tssr72631	transcription start site region 72631	1343 bp downstream
Tssr72632	transcription start site region 72632	1383 bp downstream
Tssr72633	transcription start site region 72633	1955 bp downstream
Tssr72634	transcription start site region 72634	1992 bp downstream