rs31654100 SNP Detail

Summary

• ID
  rs31654100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15892856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCGGTGAACG TGTTCCTGGG CCTGGGTGTG GCCTGGTCGG TGGCAGCGGT
  R
  TACTGGGCGG TGCAGGGTCG CCCCTTCGAG GTGCGTGCAG GCACGCTGGC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46055223	mCV27566808	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss51880851	NES14893762	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	A	G		G	A	G	G		G
ss148378173	ENSMUSSNP4074400	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss322108787	CHEV_7_16744280	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31654100					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880851	NES14893762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15892856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	within coordinates
Rr164335	regulatory region 164335	1726 bp proximal
Rr170009	regulatory region 170009	1857 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	1253 bp upstream
Tssr64588	transcription start site region 64588	1264 bp upstream