rs31654351 SNP Detail

Summary

• ID
  rs31654351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:97842620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTTGCT TTTTACTGAC
  TTCACAAGAG CCCTGGAGCA TGGTAGAAGC GAGGCTGCCA GACACCCCTT TAGTTCTGAA
  TGTAAACTGA CCTCTGAACA GCGCTGCACT TGAAAGCTGA CATTGATCTT GGCCGCCATG
  CCTCTCTTGC TGCCCACGAA GAATGGAAGA TAGAAGACAG ATGCCCTGAA AGGCTGCTGT
  R
  TGAGGATGAA CAGATAGATA GCCCCAGCCC AGAGGCCTTG GAGTCGGCTT AAAACAAGAA
  AAACGCCACC TACATGTTTG AAGCCACTCT TGAGCAATAG AACCAGAACC CCTGAAGTTG
  AGGTCAGGAA CATGTGTTTC CAGATCCGTC CTCAAGGGGA CATCAGTGTG CATCGGGGTT
  CTGTTCTCCG GCCGTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47075166	NES11612014	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31654351					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47075166	NES11612014	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:97842620 () rs orientation: forward

Symbol	Name	Function Class
B3gnt6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	within coordinates
Cpgi19443	CpG island 19443	141 bp proximal
Rr651558	regulatory region 651558	1264 bp distal
Rr651559	regulatory region 651559	1351 bp distal
Rr651560	regulatory region 651560	60 bp proximal
Rr651561	regulatory region 651561	1665 bp proximal