rs31654541 SNP Detail

Summary

• ID
  rs31654541
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190958522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAC CCCCAAAGGG GTCTTAACTC
  M
  CAGGTTGAGA ACCACTGCTC TTGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45055835	mCV24198961	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	C
ss146503196	ENSMUSSNP1096626	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31654541					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190958522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	1304 bp distal
D730003I15Rik	RIKEN cDNA D730003I15 gene	638 bp downstream
Rr29193	regulatory region 29193	721 bp distal
Rr396715	regulatory region 396715	1872 bp downstream
Rr396716	regulatory region 396716	317 bp upstream
Tssr372	transcription start site region 372	1469 bp upstream
Tssr10744	transcription start site region 10744	1864 bp downstream
Tssr10745	transcription start site region 10745	1804 bp downstream
Tssr10746	transcription start site region 10746	1263 bp downstream
Tssr10747	transcription start site region 10747	858 bp downstream
Tssr15770	transcription start site region 15770	1356 bp upstream
Tssr15771	transcription start site region 15771	1338 bp upstream
Tssr15772	transcription start site region 15772	1060 bp upstream
Tssr15773	transcription start site region 15773	1039 bp upstream