rs31655824 SNP Detail

Summary

• ID
  rs31655824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181101483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCAGCT TCCGGCTCAT
  CTGAGTCCTT GGTTTGTCAC AGGCACCTGC ACTCATGTGC ACATGCCTGC CCCACTTTGC
  ACATAATTTA AACACATCTT AATTAACATC AACATAGAAG TGCTCCCGGA GCTTCCCCCC
  CCCCCCCCCC CCCCCCCGCC GGCCACTTTT GTTTCTGCGT CTGCACAGGC CAGAGGACTG
  R
  TCTGTCTCTA GTTCTTCCAT ATCTCAGTGA GTCACAGAGC TGGAATTTGA CTGGGGTCTT
  TATGGCTCCA AAGGGCTAAA AGTCCAGTTA AACTAGCAGA TCTCTGACAG GGTTGGGAGG
  CAGCCACCCA TTTATGGTGC TGGCAGCAGC TGTGTGTTTG GACAGATGCT GATGGTCCAT
  CGCTATAGGG TGCCTTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss45056221	mCV22694727	ABI	CRAMUS_MOUSE	f	SNP	A			G
ss46725457	NES10651549	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	G	G	G
ss146392770	ENSMUSSNP3912687	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31655824					SNP	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46725457	NES10651549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181101483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1134	CpG island 1134	734 bp distal
Gm39717	predicted gene, 39717	within coordinates
Rr424716	regulatory region 424716	1726 bp distal
Rr424717	regulatory region 424717	389 bp distal
Rr424718	regulatory region 424718	848 bp distal
Rr424719	regulatory region 424719	726 bp distal
Rr424720	regulatory region 424720	within coordinates